
These blackberry cheesecake cupcakes capture everything I love about a classic cheesecake with a refreshing swirl of juicy blackberries all tucked into the palm of your hand. Perfect for sharing or for treating yourself to a bakery-level dessert right from your kitchen any day of the week.
I first made these for my best friend's birthday picnic and everyone thought they were from a fancy bakery. Now they are my go-to when I want something impressive but fuss-free.
Ingredients
- Graham cracker crumbs: give you that classic cheesecake foundation with little prep needed. Look for even, dry crumbs for best results
- Unsalted butter: holds the crust together and creates that perfect crunchy base. Name-brand butters melt very consistently here
- Cream cheese: should be brick style and at room temperature for ultimate creaminess. Philadelphia is a favorite
- Granulated sugar: sweetens both the cupcake base and the compote without overpowering the blackberry flavor. Fresh sugar goes a long way
- Eggs: provide structure and help with the custard-like cheesecake texture. Room temperature eggs blend more smoothly
- Vanilla extract: brings a comforting aroma and ties the flavors together. Pure vanilla makes a difference if you have it
- Sour cream: makes these cupcakes extra soft and tangy. Full fat version works best for richness
- Fresh blackberries: offer bursts of juicy flavor and color. Choose plump shiny berries that are dark purple almost black
- Blackberry jam: boosts berry flavor and keeps things moist in every bite. Check the label for high fruit content
- Lemon juice: wakes up the compote with bright acidity. Use fresh lemon for best flavor
- Cornstarch: is the key to thickening the compote so it stays put when topping your cupcakes
Step-by-Step Instructions
- Prep the Oven and Pan:
- Preheat your oven to three hundred twenty five degrees Fahrenheit. Line a cupcake pan with paper liners. This will help keep everything clean and make removing the cupcakes a breeze
- Make the Crust:
- Combine your graham cracker crumbs with the melted unsalted butter in a bowl. Stir until evenly blended and the mixture looks like wet sand. Firmly press a tablespoon or so of this mix into the bottom of each cupcake liner using a flat object like a shot glass
- Prepare the Cheesecake Batter:
- In a mixing bowl beat softened cream cheese with granulated sugar on medium until completely smooth and creamy. Scrape down the bowl as needed. Beat in each egg one at a time making sure each is well combined. Mix in the vanilla extract and sour cream until just blended
- Add the Blackberries:
- Gently fold fresh blackberries and blackberry jam into the cheesecake mixture using a spatula. Carefully turn the mixture so berries stay whole and avoid overmixing which breaks them down
- Bake the Cupcakes:
- Fill each cupcake liner almost to the top with your cheesecake mixture. Bake for about twenty to twenty two minutes. The tops should be set but centers should still have a slight jiggle. Let the cupcakes cool completely in the pan for best texture
- Prepare the Compote:
- In a saucepan combine fresh blackberries granulated sugar and lemon juice. Warm over medium heat until the berries burst and mixture looks juicy. Stir in the cornstarch dissolved in cold water. Cook until thick and glossy then let cool
- Assemble the Cupcakes:
- After cupcakes are fully cool use a spoon to add a dollop of blackberry compote over the top of each one. For a pretty finish add a few extra fresh blackberries right before serving

My favorite part about making these is that first swirl of blackberry jam through the cheesecake batter. The way those ribbons bake up is so pretty—my niece always sneaks into the kitchen at this stage with a spoon in hand. These cupcakes have become a birthday tradition in our family.
Storage Tips
Keep the finished cupcakes stored in an airtight container in the fridge for up to four days. If you want to make them ahead of time for an event you can freeze the undecorated cheesecakes in their liners and just thaw and add compote when ready to serve.
Ingredient Substitutions
You can swap in raspberries if blackberries are hard to find or use a high-quality seedless berry jam instead of fresh fruit in a pinch. Greek yogurt will work if you do not have sour cream though it yields a slightly lighter texture.
Serving Suggestions
Serve chilled straight out of the fridge for the creamiest texture. For a fun brunch twist garnish each with lemon zest or a swirl of whipped cream. These cupcakes also make a stunning tea party display when topped with edible blossoms.

Cultural and Historical Context
Cheesecake has ancient roots but the idea of individual cheesecake cupcakes really took off as American home bakers looked for party-friendly spins on showstopper desserts. Blackberries themselves have a rich history in classic European desserts but shine brilliantly here in a New World treat.
Recipe FAQs
- → How do I keep cheesecake cupcakes from cracking?
Ensure cream cheese is softened and avoid overbeating the batter. Bake until just set, then cool gradually for the best texture.
- → Can I use frozen blackberries?
Yes, thaw and drain them well before folding into the batter to prevent excess moisture and sogginess.
- → How do I store these cupcakes?
Keep them refrigerated in an airtight container. They stay fresh for up to three days and taste even better chilled.
- → Can I make the compote ahead?
Absolutely! Prepare the compote in advance and refrigerate. Spoon over cupcakes just before serving for best flavor.
- → Why is my graham cracker crust crumbly?
Ensure the butter fully coats the crumbs and press the mixture firmly into each liner before baking for a firm base.
- → What’s the best way to fold in blackberries?
Gently fold using a spatula to keep berries intact, preventing color streaks and ensuring a tender crumb.